We consider here the problem of chaining seeds in ordered trees. Seeds are mappings between two trees Q and T and a chain is a subset of non overlapping seeds that is consistent wi...
Background: While microarrays are the predominant method for gene expression profiling, probe signal variation is still an area of active research. Probe signal is sequence depend...
Abstract. A probabilistic graphical model is developed in order to detect the dependent evolution between different sites in biological sequences. Given a multiple sequence alignme...
During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
- microRNAs (miRNAs) are 20-22 nt noncoding RNAs which are rapidly emerging as crucial regulators of gene expression in plants and animals. Identification of the hairpins which yie...
Karol Szafranski, Molly Megraw, Martin Reczko, Art...