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» Problems on RNA Secondary Structure Prediction and Design
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IWOCA
2010
Springer
219views Algorithms» more  IWOCA 2010»
14 years 8 months ago
Efficient Chaining of Seeds in Ordered Trees
We consider here the problem of chaining seeds in ordered trees. Seeds are mappings between two trees Q and T and a chain is a subset of non overlapping seeds that is consistent wi...
Julien Allali, Cedric Chauve, Pascal Ferraro, Anne...
BMCBI
2010
93views more  BMCBI 2010»
15 years 2 months ago
Hybridization thermodynamics of NimbleGen Microarrays
Background: While microarrays are the predominant method for gene expression profiling, probe signal variation is still an area of active research. Probe signal is sequence depend...
Ulrike Mückstein, Germán G. Leparc, Al...
RECOMB
2006
Springer
16 years 2 months ago
Detecting the Dependent Evolution of Biosequences
Abstract. A probabilistic graphical model is developed in order to detect the dependent evolution between different sites in biological sequences. Given a multiple sequence alignme...
Jeremy Darot, Chen-Hsiang Yeang, David Haussler
COMPLIFE
2005
Springer
15 years 7 months ago
Fast and Accurate Structural RNA Alignment by Progressive Lagrangian Optimization
During the last few years new functionalities of RNA have been discovered, renewing the need for computational tools for their analysis. To this respect, multiple sequence alignmen...
Markus Bauer, Gunnar W. Klau, Knut Reinert
BIOCOMP
2006
15 years 3 months ago
Support Vector Machines for Predicting microRNA Hairpins
- microRNAs (miRNAs) are 20-22 nt noncoding RNAs which are rapidly emerging as crucial regulators of gene expression in plants and animals. Identification of the hairpins which yie...
Karol Szafranski, Molly Megraw, Martin Reczko, Art...