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» Production of Large Computer Programs
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IPPS
2003
IEEE
15 years 7 months ago
Sequence Alignment on the Cray MTA-2
The standard algorithm for alignment of DNA sequences using dynamic programming has been implemented on the Cray MTA-2 (Multithreaded Architecture-2) at ENRI (Electronic Navigatio...
Shahid H. Bokhari, Jon R. Sauer
ESOP
2008
Springer
15 years 4 months ago
A Hybrid Denotational Semantics for Hybrid Systems
Abstract. In this article, we present a model and a denotational semantics for hybrid systems. Our model is designed to be used for the verification of large, existing embedded app...
Olivier Bouissou, Matthieu Martel
GPEM
2008
128views more  GPEM 2008»
15 years 2 months ago
Coevolutionary bid-based genetic programming for problem decomposition in classification
In this work a cooperative, bid-based, model for problem decomposition is proposed with application to discrete action domains such as classification. This represents a significan...
Peter Lichodzijewski, Malcolm I. Heywood
ICA3PP
2005
Springer
15 years 8 months ago
GridMD: Program Architecture for Distributed Molecular Simulation
In the present work we describe architectural concepts of the distributed molecular simulation package GridMD. The main purpose of this work is to underline the construction patter...
Ilya Valuev
BMCBI
2010
112views more  BMCBI 2010»
15 years 2 months ago
A parameter-adaptive dynamic programming approach for inferring cophylogenies
Background: Coevolutionary systems like hosts and their parasites are commonly used model systems for evolutionary studies. Inferring the coevolutionary history based on given phy...
Daniel Merkle, Martin Middendorf, Nicolas Wieseke