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BMCBI
2006
160views more  BMCBI 2006»
15 years 5 months ago
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
Background: In order to improve gene prediction, extrinsic evidence on the gene structure can be collected from various sources of information such as genome-genome comparisons an...
Mario Stanke, Oliver Schöffmann, Burkhard Mor...
BMCBI
2005
109views more  BMCBI 2005»
15 years 4 months ago
Genome comparison without alignment using shortest unique substrings
Background: Sequence comparison by alignment is a fundamental tool of molecular biology. In this paper we show how a number of sequence comparison tasks, including the detection o...
Bernhard Haubold, Nora Pierstorff, Friedrich M&oum...
INFOCOM
2008
IEEE
15 years 11 months ago
SRLG Failure Localization in All-Optical Networks Using Monitoring Cycles and Paths
—We introduce the concepts of monitoring paths (MPs) and monitoring cycles (MCs) for unique localization of shared risk linked group (SRLG) failures in all-optical networks. An S...
Satyajeet Ahuja, Srinivasan Ramasubramanian, Marwa...
ADC
1999
Springer
97views Database» more  ADC 1999»
15 years 9 months ago
Pseudo-Naive Evaluation
We introduce pseudo-naive evaluation, a method for execution of mixed top-down/bottom-up logic programs and deductive databases. The method is intermediate in power between naive ...
Donald A. Smith, Mark Utting
FCCM
2002
IEEE
171views VLSI» more  FCCM 2002»
15 years 10 months ago
Coarse-Grain Pipelining on Multiple FPGA Architectures
Reconfigurable systems, and in particular, FPGA-based custom computing machines, offer a unique opportunity to define application-specific architectures. These architectures offer...
Heidi E. Ziegler, Byoungro So, Mary W. Hall, Pedro...