We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program N...
Robert Brunner, James C. Phillips, Laxmikant V. Ka...
Overlapping communication with computation is an important optimization on current cluster architectures; its importance is likely to increase as the doubling of processing power ...
Wei-Yu Chen, Dan Bonachea, Costin Iancu, Katherine...
In this paper we present the results of parallelizing two life sciences applications, Markov random fieldsbased (MRF) liver segmentation and HMMER’s Viterbi algorithm, using GP...
John Paul Walters, Vidyananth Balu, Suryaprakash K...
In this article, a hybrid optimization method has been proposed consisting of modified ant colony systems (ACSs) and constrained nonlinear programming (NLP) to solve the problems ...
Java exception checks are designed to ensure that any faulting instruction causing a hardware exception does not terminate the program abnormally. These checks, however, impose so...