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» Program Optimization and Parallelization Using Idioms
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2000
ACM
15 years 2 months ago
Scalable Molecular Dynamics for Large Biomolecular Systems
We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program N...
Robert Brunner, James C. Phillips, Laxmikant V. Ka...
ICS
2007
Tsinghua U.
15 years 3 months ago
Automatic nonblocking communication for partitioned global address space programs
Overlapping communication with computation is an important optimization on current cluster architectures; its importance is likely to increase as the doubling of processing power ...
Wei-Yu Chen, Dan Bonachea, Costin Iancu, Katherine...
IPPS
2009
IEEE
15 years 4 months ago
Evaluating the use of GPUs in liver image segmentation and HMMER database searches
In this paper we present the results of parallelizing two life sciences applications, Markov random fieldsbased (MRF) liver segmentation and HMMER’s Viterbi algorithm, using GP...
John Paul Walters, Vidyananth Balu, Suryaprakash K...
IJACTAICIT
2010
160views more  IJACTAICIT 2010»
14 years 7 months ago
Concentric Circular Array Antenna Null Steering Synthesis by Using Modified Hybrid Ant Colony System Algorithm
In this article, a hybrid optimization method has been proposed consisting of modified ant colony systems (ACSs) and constrained nonlinear programming (NLP) to solve the problems ...
Ali Abdulhadi Noaman
IEEEPACT
2002
IEEE
15 years 2 months ago
Eliminating Exception Constraints of Java Programs for IA-64
Java exception checks are designed to ensure that any faulting instruction causing a hardware exception does not terminate the program abnormally. These checks, however, impose so...
Kazuaki Ishizaki, Tatsushi Inagaki, Hideaki Komats...