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» Program comprehension as fact finding
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BMCBI
2007
113views more  BMCBI 2007»
14 years 11 months ago
PILER-CR: Fast and accurate identification of CRISPR repeats
Background: Sequencing of prokaryotic genomes has recently revealed the presence of CRISPR elements: short, highly conserved repeats separated by unique sequences of similar lengt...
Robert C. Edgar
90
Voted
SIGSOFT
2010
ACM
14 years 9 months ago
The missing links: bugs and bug-fix commits
Empirical studies of software defects rely on links between bug databases and program code repositories. This linkage is typically based on bug-fixes identified in developer-enter...
Adrian Bachmann, Christian Bird, Foyzur Rahman, Pr...
93
Voted
ICALP
2009
Springer
15 years 12 months ago
Algorithms for Secretary Problems on Graphs and Hypergraphs
We examine several online matching problems, with applications to Internet advertising reservation systems. Consider an edge-weighted bipartite graph G, with partite sets L, R. We...
Martin Pál, Nitish Korula
BMCBI
2004
151views more  BMCBI 2004»
14 years 11 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich
ICDE
2004
IEEE
179views Database» more  ICDE 2004»
16 years 1 months ago
CrossMine: Efficient Classification Across Multiple Database Relations
Most of today's structured data is stored in relational databases. Such a database consists of multiple relations which are linked together conceptually via entity-relationsh...
Xiaoxin Yin, Jiawei Han, Jiong Yang, Philip S. Yu