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BMCBI
2006
139views more  BMCBI 2006»
14 years 9 months ago
Integrated functional visualization of eukaryotic genomes
Background: Increasing amounts of data from large scale whole genome analysis efforts demands convenient tools for manipulation, visualization and investigation. Whole genome plot...
Rohit Ghai, Hannes Lindemann, Trinad Chakraborty
BMCBI
2005
292views more  BMCBI 2005»
14 years 9 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
PVLDB
2008
113views more  PVLDB 2008»
14 years 8 months ago
Rewriting procedures for batched bindings
Queries, or calls to stored procedures/user-defined functions are often invoked multiple times, either from within a loop in an application program, or from the where/select claus...
Ravindra Guravannavar, S. Sudarshan
DAC
2005
ACM
15 years 10 months ago
Locality-conscious workload assignment for array-based computations in MPSOC architectures
While the past research discussed several advantages of multiprocessor-system-on-a-chip (MPSOC) architectures from both area utilization and design verification perspectives over ...
Feihui Li, Mahmut T. Kandemir
PPOPP
2003
ACM
15 years 3 months ago
Using generative design patterns to generate parallel code for a distributed memory environment
A design pattern is a mechanism for encapsulating the knowledge of experienced designers into a re-usable artifact. Parallel design patterns reflect commonly occurring parallel co...
Kai Tan, Duane Szafron, Jonathan Schaeffer, John A...