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AI
2008
Springer
14 years 9 months ago
Maintenance goals of agents in a dynamic environment: Formulation and policy construction
The notion of maintenance often appears in the AI literature in the context of agent behavior and planning. In this paper, we argue that earlier characterizations of the notion of...
Chitta Baral, Thomas Eiter, Marcus Bjäreland,...
BMCBI
2010
137views more  BMCBI 2010»
14 years 9 months ago
BS Seeker: precise mapping for bisulfite sequencing
Background: Bisulfite sequencing using next generation sequencers yields genome-wide measurements of DNA methylation at single nucleotide resolution. Traditional aligners are not ...
Pao-Yang Chen, Shawn Cokus, Matteo Pellegrini
79
Voted
BMCBI
2010
117views more  BMCBI 2010»
14 years 9 months ago
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
Daniel G. Brown 0001, Jakub Truszkowski
73
Voted
BMCBI
2007
115views more  BMCBI 2007»
14 years 9 months ago
Comparing sequences without using alignments: application to HIV/SIV subtyping
Background: In general, the construction of trees is based on sequence alignments. This procedure, however, leads to loss of informationwhen parts of sequence alignments (for inst...
Gilles Didier, Laurent Debomy, Maude Pupin, Ming Z...
BMCBI
2007
109views more  BMCBI 2007»
14 years 9 months ago
Seahawk: moving beyond HTML in Web-based bioinformatics analysis
Background: Traditional HTML interfaces for input to and output from Bioinformatics analysis on the Web are highly variable in style, content and data formats. Combining multiple ...
Paul M. K. Gordon, Christoph W. Sensen