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IPPS
2009
IEEE
15 years 10 months ago
Exploring FPGAs for accelerating the phylogenetic likelihood function
Driven by novel biological wet lab techniques such as pyrosequencing there has been an unprecedented molecular data explosion over the last 2-3 years. The growth of biological seq...
Nikolaos Alachiotis, Euripides Sotiriades, Apostol...
132
Voted
BIBE
2006
IEEE
135views Bioinformatics» more  BIBE 2006»
15 years 9 months ago
Evidence of Multiple Maximum Likelihood Points for a Phylogenetic Tree
An interesting and important, but largely ignored question associated with the ML method is whether there exists only a single maximum likelihood point for a given phylogenetic tr...
Bing Bing Zhou, Monther Tarawneh, Pinghao Wang, Da...
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
15 years 3 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
206
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POPL
2004
ACM
16 years 3 months ago
A type system for well-founded recursion
In the interest of designing a recursive module extension to ML that is as simple and general as possible, we propose a novel type system for general recursion over effectful expr...
Derek Dreyer
142
Voted
ICFP
2005
ACM
16 years 3 months ago
Simple, partial type-inference for System F based on type-containment
We explore partial type-inference for System F based on type-containment. We consider both cases of a purely functional semantics and a call-by-value stateful semantics. To enable...
Didier Rémy