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» Programming with enumerable sets of structures
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ICDE
2005
IEEE
139views Database» more  ICDE 2005»
16 years 12 days ago
Compressing Bitmap Indices by Data Reorganization
Many scientific applications generate massive volumes of data through observations or computer simulations, bringing up the need for effective indexing methods for efficient stora...
Ali Pinar, Tao Tao, Hakan Ferhatosmanoglu
BMCBI
2006
158views more  BMCBI 2006»
14 years 11 months ago
Detection of non-coding RNAs on the basis of predicted secondary structure formation free energy change
Background: Non-coding RNAs (ncRNAs) have a multitude of roles in the cell, many of which remain to be discovered. However, it is difficult to detect novel ncRNAs in biochemical s...
Andrew V. Uzilov, Joshua M. Keegan, David H. Mathe...
BMCBI
2008
101views more  BMCBI 2008»
14 years 11 months ago
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related
Background: For many types of analyses, data about gene structure and locations of non-coding regions of genes are required. Although a vast amount of genomic sequence data is ava...
Oliver Keller, Florian Odronitz, Mario Stanke, Mar...
84
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ICDT
1995
ACM
96views Database» more  ICDT 1995»
15 years 2 months ago
On Two Forms of Structural Recursion
We investigate and compare two forms of recursion on sets for querying nested collections. The rst one is called sri and it corresponds to sequential processing of data. The second...
Dan Suciu, Limsoon Wong
RECOMB
2005
Springer
15 years 11 months ago
Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
Abstract. In order to guarantee that the optimal motif is found, traditional pattern-driven approaches perform an exhaustive search over all candidate motifs of length l. We develo...
Sing-Hoi Sze, Xiaoyan Zhao