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» Progressive multiple sequence alignments from triplets
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BMCBI
2006
139views more  BMCBI 2006»
13 years 6 months ago
Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise li
Background: Multiple sequence alignment (MSA) is a useful tool in bioinformatics. Although many MSA algorithms have been developed, there is still room for improvement in accuracy...
Shinsuke Yamada, Osamu Gotoh, Hayato Yamana
BIOINFORMATICS
2000
110views more  BIOINFORMATICS 2000»
13 years 6 months ago
ProtEST: protein multiple sequence alignments from expressed sequence tags
James A. Cuff, Ewan Birney, Michele E. Clamp, Geof...
IPPS
2009
IEEE
14 years 1 months ago
Parallel reconstruction of neighbor-joining trees for large multiple sequence alignments using CUDA
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
BMCBI
2005
142views more  BMCBI 2005»
13 years 6 months ago
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
Olaf R. P. Bininda-Emonds
WABI
2007
Springer
123views Bioinformatics» more  WABI 2007»
14 years 14 days ago
Inverse Sequence Alignment from Partial Examples
When aligning biological sequences, the choice of parameter values for the alignment scoring function is critical. Small changes in gap penalties, for example, can yield radically ...
Eagu Kim, John D. Kececioglu