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» Proof and Computation in Geometry
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112
Voted
RECOMB
2006
Springer
16 years 27 days ago
A Study of Accessible Motifs and RNA Folding Complexity
mRNA molecules are folded in the cells and therefore many of their substrings may actually be inaccessible to protein and microRNA binding. The need to apply an accessability crite...
Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Zi...
97
Voted
STOC
2006
ACM
129views Algorithms» more  STOC 2006»
16 years 27 days ago
Optimal phylogenetic reconstruction
One of the major tasks of evolutionary biology is the reconstruction of phylogenetic trees from molecular data. The evolutionary model is given by a Markov chain on the true evolu...
Constantinos Daskalakis, Elchanan Mossel, Sé...
109
Voted
STOC
2003
ACM
171views Algorithms» more  STOC 2003»
16 years 27 days ago
Primal-dual meets local search: approximating MST's with nonuniform degree bounds
We present a new bicriteria approximation algorithm for the degree-bounded minimum-cost spanning tree problem: Given an undirected graph with nonnegative edge weights and degree b...
Jochen Könemann, R. Ravi
123
Voted
ICS
2009
Tsinghua U.
15 years 7 months ago
QuakeTM: parallelizing a complex sequential application using transactional memory
“Is transactional memory useful?” is the question that cannot be answered until we provide substantial applications that can evaluate its capabilities. While existing TM appli...
Vladimir Gajinov, Ferad Zyulkyarov, Osman S. Unsal...
108
Voted
FOCS
2009
IEEE
15 years 7 months ago
Reducibility among Fractional Stability Problems
— In a landmark paper [32], Papadimitriou introduced a number of syntactic subclasses of TFNP based on proof styles that (unlike TFNP) admit complete problems. A recent series of...
Shiva Kintali, Laura J. Poplawski, Rajmohan Rajara...