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» ProtChew: Automatic Extraction of Protein Names from Biomedi...
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APBC
2004
14 years 11 months ago
PathwayFinder: Paving the Way Towards Automatic Pathway Extraction
Automatically mining protein pathway information from the vast amount of published literature has been an increasing need from the pharmaceutical industry and biomedical research ...
Daming Yao, Jingbo Wang, Yanmei Lu, Nathan Noble, ...
CSB
2004
IEEE
136views Bioinformatics» more  CSB 2004»
15 years 1 months ago
AZuRE, a Scalable System for Automated Term Disambiguation of Gene and Protein Names
Researchers, hindered by a lack of standard gene and protein-naming conventions, endure long, sometimes fruitless, literature searches. A system is described which is able to auto...
Raf M. Podowski, John G. Cleary, Nicholas T. Gonch...
BMCBI
2008
147views more  BMCBI 2008»
14 years 9 months ago
Assessment of disease named entity recognition on a corpus of annotated sentences
Background: In recent years, the recognition of semantic types from the biomedical scientific literature has been focused on named entities like protein and gene names (PGNs) and ...
Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz,...
BMCBI
2007
181views more  BMCBI 2007»
14 years 9 months ago
Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases
Background: In recent years, mammalian protein-protein interaction network databases have been developed. The interactions in these databases are either extracted manually from lo...
Seth I. Berger, Jeremy M. Posner, Avi Ma'ayan
DILS
2006
Springer
15 years 1 months ago
Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions
Linking the biomedical literature to other data resources is notoriously difficult and requires text mining. Text mining aims to automatically extract facts from literature. Since ...
Tobias Kuhn, Loïc Royer, Norbert E. Fuchs, Mi...