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» Protein Classification with Multiple Algorithms
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BMCBI
2010
183views more  BMCBI 2010»
14 years 9 months ago
Active learning for human protein-protein interaction prediction
Background: Biological processes in cells are carried out by means of protein-protein interactions. Determining whether a pair of proteins interacts by wet-lab experiments is reso...
Thahir P. Mohamed, Jaime G. Carbonell, Madhavi Gan...
SDM
2010
SIAM
165views Data Mining» more  SDM 2010»
14 years 11 months ago
Exact Passive-Aggressive Algorithm for Multiclass Classification Using Support Class
The Passive Aggressive framework [1] is a principled approach to online linear classification that advocates minimal weight updates i.e., the least required so that the current tr...
Shin Matsushima, Nobuyuki Shimizu, Kazuhiro Yoshid...
99
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TCBB
2008
126views more  TCBB 2008»
14 years 9 months ago
Graphical Models of Residue Coupling in Protein Families
Abstract-- Many statistical measures and algorithmic techniques have been proposed for studying residue coupling in protein families. Generally speaking, two residue positions are ...
John Thomas, Naren Ramakrishnan, Chris Bailey-Kell...
JCP
2008
121views more  JCP 2008»
14 years 9 months ago
Algorithms for Identifying the Multiple Syntactic Categories and Meanings of the Word Over
The word over, among others, is associated with a great variety of syntactic categories and meanings. Although over has received attention from scholars in different frameworks for...
Yukiko Sasaki Alam
JCB
2002
116views more  JCB 2002»
14 years 9 months ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye