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» Protein Classification with Multiple Algorithms
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BMCBI
2006
180views more  BMCBI 2006»
14 years 9 months ago
Building multiclass classifiers for remote homology detection and fold recognition
Motivation Protein remote homology prediction and fold recognition are central problems in computational biology. Supervised learning algorithms based on support vector machines a...
Huzefa Rangwala, George Karypis
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
15 years 4 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
79
Voted
BMCBI
2005
190views more  BMCBI 2005»
14 years 9 months ago
Species-specific analysis of protein sequence motifs using mutual information
Background: Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles de...
Jan Hummel, Nima Keshvari, Wolfram Weckwerth, Joac...
70
Voted
BMCBI
2010
150views more  BMCBI 2010»
14 years 9 months ago
AMS 3.0: prediction of post-translational modifications
Background: We present here the recent update of AMS algorithm for identification of post-translational modification (PTM) sites in proteins based only on sequence information, us...
Subhadip Basu, Dariusz Plewczynski
NIPS
2004
14 years 11 months ago
Incremental Algorithms for Hierarchical Classification
We study the problem of hierarchical classification when labels corresponding to partial and/or multiple paths in the underlying taxonomy are allowed. We introduce a new hierarchi...
Nicolò Cesa-Bianchi, Claudio Gentile, Andre...