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» Protein Classification with Multiple Algorithms
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BMCBI
2006
108views more  BMCBI 2006»
14 years 9 months ago
NOXclass: prediction of protein-protein interaction types
Background: Structural models determined by X-ray crystallography play a central role in understanding protein-protein interactions at the molecular level. Interpretation of these...
Hongbo Zhu, Francisco S. Domingues, Ingolf Sommer,...
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra
Mass spectrometry is a particularly useful technology for the rapid and robust identification of peptides and proteins in complex mixtures. Peptide sequences can be identified b...
Aaron A. Klammer, Christine C. Wu, Michael J. MacC...
COMAD
2008
14 years 11 months ago
REBMEC: Repeat Based Maximum Entropy Classifier for Biological Sequences
An important problem in biological data analysis is to predict the family of a newly discovered sequence like a protein or DNA sequence, using the collection of available sequence...
Pratibha Rani, Vikram Pudi
ICDE
2007
IEEE
124views Database» more  ICDE 2007»
15 years 11 months ago
Topology Search over Biological Databases
We introduce the notion of a data topology and the problem of topology search over databases. A data topology summarizes the set of all possible relationships that connect a given...
Lin Guo, Jayavel Shanmugasundaram, Golan Yona
BMCBI
2008
140views more  BMCBI 2008»
14 years 9 months ago
FUNYBASE: a FUNgal phYlogenomic dataBASE
Background: The increasing availability of fungal genome sequences provides large numbers of proteins for evolutionary and phylogenetic analyses. However the heterogeneity of data...
Sylvain Marthey, Gabriela Aguileta, Françoi...