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» Protein Classification with Multiple Algorithms
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BMCBI
2007
115views more  BMCBI 2007»
14 years 9 months ago
Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets
Background: In structural genomics, an important goal is the detection and classification of protein–protein interactions, given the structures of the interacting partners. We h...
Guillaume Launay, Raul Mendez, Shoshana J. Wodak, ...
ICML
2006
IEEE
15 years 10 months ago
Nonstationary kernel combination
The power and popularity of kernel methods stem in part from their ability to handle diverse forms of structured inputs, including vectors, graphs and strings. Recently, several m...
Darrin P. Lewis, Tony Jebara, William Stafford Nob...
RECOMB
2004
Springer
15 years 10 months ago
Probabilistic discovery of overlapping cellular processes and their regulation
In this paper, we explore modeling overlapping biological processes. We discuss a probabilistic model of overlapping biological processes, gene membership in those processes, and ...
Alexis Battle, Eran Segal, Daphne Koller
GCB
2005
Springer
98views Biometrics» more  GCB 2005»
15 years 3 months ago
Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation
: Functionally related genes involved in the same molecular-genetic, biochemical, or physiological process are often regulated coordinately Such regulation is provided by precisely...
Alexander E. Kel, Tatiana Konovalova, Tagir Valeev...
CIKM
2008
Springer
14 years 11 months ago
A system for finding biological entities that satisfy certain conditions from texts
Finding biological entities (such as genes or proteins) that satisfy certain conditions from texts is an important and challenging task in biomedical information retrieval and tex...
Wei Zhou, Clement T. Yu, Weiyi Meng