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JCC
2006
69views more  JCC 2006»
14 years 11 months ago
Dramatic performance enhancements for the FASTER optimization algorithm
: FASTER is a combinatorial optimization algorithm useful for finding low-energy side-chain configurations in side-chain placement and protein design calculations. We present two s...
Benjamin D. Allen, Stephen L. Mayo
BIOINFORMATICS
2007
151views more  BIOINFORMATICS 2007»
14 years 11 months ago
A new protein-protein docking scoring function based on interface residue properties
Motivation: Protein–protein complexes are known to play key roles in many cellular processes. However, they are often not accessible to experimental study because of their low s...
Julie Bernauer, Jérôme Azé, Jo...
ICASSP
2007
IEEE
15 years 6 months ago
Protein Fold Recognition using Residue-Based Alignments of Sequence and Secondary Structure
Protein structure prediction aims to determine the three-dimensional structure of proteins form their amino acid sequences. When a protein does not have similarity (homology) to a...
Zafer Aydin, Hakan Erdogan, Yucel Altunbasak
GECCO
2004
Springer
259views Optimization» more  GECCO 2004»
15 years 5 months ago
Evaluation of Different Fitness Functions for the Evolutionary Testing of an Autonomous Parking System
The method of evolutionary functional testing allows for the automation of testing by transforming test case design into an optimization problem. To this end it is necessary to def...
Joachim Wegener, Oliver Bühler
84
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NAR
2007
62views more  NAR 2007»
14 years 11 months ago
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
MolProbity is a general-purpose web server offering quality validation for 3D structures of proteins, nucleic acids and complexes. It provides detailed all-atom contact analysis o...
Ian W. Davis, Andrew Leaver-Fay, Vincent B. Chen, ...