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» Protein Sequence Pattern Mining with Constraints
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JCP
2006
139views more  JCP 2006»
14 years 10 months ago
Generalized Sequential Pattern Mining with Item Intervals
Sequential pattern mining is an important data mining method with broad applications that can extract frequent sequences while maintaining their order. However, it is important to ...
Yu Hirate, Hayato Yamana
BMCBI
2008
123views more  BMCBI 2008»
14 years 10 months ago
Functional module detection by functional flow pattern mining in protein interaction networks
eraction networks. In this abstract, we extend this approach by mining functional flow patterns for the purpose of detecting small-sized modules for specific functions. Methods Our...
Young-Rae Cho, Lei Shi, Aidong Zhang
ICDM
2009
IEEE
152views Data Mining» more  ICDM 2009»
15 years 5 months ago
SLIDER: Mining Correlated Motifs in Protein-Protein Interaction Networks
Correlated motif mining (CMM) is the problem to find overrepresented pairs of patterns, called motif pairs, in interacting protein sequences. Algorithmic solutions for CMM thereb...
Peter Boyen, Frank Neven, Dries Van Dyck, Aalt-Jan...
DIS
2010
Springer
14 years 8 months ago
Mining Class-Correlated Patterns for Sequence Labeling
Sequence labeling is the task of assigning a label sequence to an observation sequence. Since many methods to solve this problem depend on the specification of predictive features...
Thomas Hopf, Stefan Kramer
BMCBI
2006
114views more  BMCBI 2006»
14 years 10 months ago
Mining frequent patterns for AMP-activated protein kinase regulation on skeletal muscle
Background: AMP-activated protein kinase (AMPK) has emerged as a significant signaling intermediary that regulates metabolisms in response to energy demand and supply. An investig...
Qingfeng Chen, Yi-Ping Phoebe Chen