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» Protein Sequence Pattern Mining with Constraints
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DAWAK
2005
Springer
15 years 4 months ago
Optimizing a Sequence of Frequent Pattern Queries
Discovery of frequent patterns is a very important data mining problem with numerous applications. Frequent pattern mining is often regarded as advanced querying where a user speci...
Mikolaj Morzy, Marek Wojciechowski, Maciej Zakrzew...
ICDE
2009
IEEE
173views Database» more  ICDE 2009»
14 years 8 months ago
Efficient Mining of Closed Repetitive Gapped Subsequences from a Sequence Database
There is a huge wealth of sequence data available, for example, customer purchase histories, program execution traces, DNA, and protein sequences. Analyzing this wealth of data to ...
Bolin Ding, David Lo, Jiawei Han, Siau-Cheng Khoo
BMCBI
2008
127views more  BMCBI 2008»
14 years 10 months ago
MetaMine - A tool to detect and analyse gene patterns in their environmental context
Background: Modern sequencing technologies allow rapid sequencing and bioinformatic analysis of genomes and metagenomes. With every new sequencing project a vast number of new pro...
Uta Bohnebeck, Thierry Lombardot, Renzo Kottmann, ...
BMCBI
2004
177views more  BMCBI 2004»
14 years 10 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu
BMCBI
2004
229views more  BMCBI 2004»
14 years 10 months ago
Automatic annotation of protein motif function with Gene Ontology terms
Background: Conserved protein sequence motifs are short stretches of amino acid sequence patterns that potentially encode the function of proteins. Several sequence pattern search...
Xinghua Lu, Chengxiang Zhai, Vanathi Gopalakrishna...