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» Protein secondary structure prediction using neural networks
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114
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BMCBI
2004
174views more  BMCBI 2004»
15 years 8 days ago
Implications for domain fusion protein-protein interactions based on structural information
Background: Several in silico methods exist that were developed to predict protein interactions from the copious amount of genomic and proteomic data. One of these methods is Doma...
Jer-Ming Chia, Prasanna R. Kolatkar
BMCBI
2010
103views more  BMCBI 2010»
15 years 16 days ago
Prediction of GTP interacting residues, dipeptides and tripeptides in a protein from its evolutionary information
Background: Guanosine triphosphate (GTP)-binding proteins play an important role in regulation of G-protein. Thus prediction of GTP interacting residues in a protein is one of the...
Jagat S. Chauhan, Nitish K. Mishra, Gajendra P. S....
123
Voted
JCB
2006
215views more  JCB 2006»
15 years 11 days ago
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e., segmentation con...
Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, V...
117
Voted
EVOW
2004
Springer
15 years 5 months ago
Two-Step Genetic Programming for Optimization of RNA Common-Structure
We present an algorithm for identifying putative non-coding RNA (ncRNA) using an RCSG (RNA Common-Structural Grammar) and show the effectiveness of the algorithm. The algorithm con...
Jin-Wu Nam, Je-Gun Joung, Y. S. Ahn, Byoung-Tak Zh...
110
Voted
BMCBI
2004
265views more  BMCBI 2004»
15 years 8 days ago
ASAView: Database and tool for solvent accessibility representation in proteins
Background: Accessible surface area (ASA) or solvent accessibility of amino acids in a protein has important implications. Knowledge of surface residues helps in locating potentia...
Shandar Ahmad, M. Michael Gromiha, Hamed Fawareh, ...