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» Protocol Implementation Using Integrated Layer Processing
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BMCBI
2005
87views more  BMCBI 2005»
14 years 11 months ago
Efficient decoding algorithms for generalized hidden Markov model gene finders
Background: The Generalized Hidden Markov Model (GHMM) has proven a useful framework for the task of computational gene prediction in eukaryotic genomes, due to its flexibility an...
William H. Majoros, Mihaela Pertea, Arthur L. Delc...
SIGMOD
2012
ACM
234views Database» more  SIGMOD 2012»
13 years 1 months ago
Oracle in-database hadoop: when mapreduce meets RDBMS
Big data is the tar sands of the data world: vast reserves of raw gritty data whose valuable information content can only be extracted at great cost. MapReduce is a popular parall...
Xueyuan Su, Garret Swart
FPL
2010
Springer
188views Hardware» more  FPL 2010»
14 years 9 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
CF
2005
ACM
15 years 1 months ago
Dynamic loop pipelining in data-driven architectures
Data-driven array architectures seem to be important alternatives for coarse-grained reconfigurable computing platforms. Their use has provided performance improvements over micro...
João M. P. Cardoso
WWW
2003
ACM
15 years 12 months ago
Bridging the P2P and WWW Divide with DISCOVIR - DIStributed COntent-based Visual Information Retrieval
In the light of image retrieval evolving from text annotation to content-based and from standalone applications to web-based search engines, we foresee the need for deploying cont...
Ka Cheung Sia, Cheuk Hang Ng, Chi-Hang Chan