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PC
2006
124views Management» more  PC 2006»
14 years 11 months ago
Message-passing code generation for non-rectangular tiling transformations
Tiling is a well known loop transformation used to reduce communication overhead in distributed memory machines. Although a lot of theoretical research has been done concerning th...
Georgios I. Goumas, Nikolaos Drosinos, Maria Athan...
IPPS
2008
IEEE
15 years 6 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
BMCBI
2011
14 years 3 months ago
A user-friendly web portal for T-Coffee on supercomputers
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
PODC
2011
ACM
14 years 2 months ago
Robust network supercomputing without centralized control
Internet supercomputing is becoming an increasingly popular means for harnessing the power of a vast number of interconnected computers. This comes at a cost substantially lower t...
Seda Davtyan, Kishori M. Konwar, Alexander A. Shva...
IPPS
2009
IEEE
15 years 6 months ago
Portable builds of HPC applications on diverse target platforms
—High-end machines at modern HPC centers are constantly undergoing hardware and system software upgrades – necessitating frequent rebuilds of application codes. The number of p...
Magdalena Slawiñska, Jaroslaw Slawinski, Va...