Tiling is a well known loop transformation used to reduce communication overhead in distributed memory machines. Although a lot of theoretical research has been done concerning th...
Georgios I. Goumas, Nikolaos Drosinos, Maria Athan...
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
Background: Parallel T-Coffee (PTC) was the first parallel implementation of the T-Coffee multiple sequence alignment tool. It is based on MPI and RMA mechanisms. Its purpose is t...
Josep Rius Torrento, Fernando Cores, Francesc Sols...
Internet supercomputing is becoming an increasingly popular means for harnessing the power of a vast number of interconnected computers. This comes at a cost substantially lower t...
Seda Davtyan, Kishori M. Konwar, Alexander A. Shva...
—High-end machines at modern HPC centers are constantly undergoing hardware and system software upgrades – necessitating frequent rebuilds of application codes. The number of p...