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» Public real data repositories and measurement tools
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SIGSOFT
2010
ACM
14 years 7 months ago
The missing links: bugs and bug-fix commits
Empirical studies of software defects rely on links between bug databases and program code repositories. This linkage is typically based on bug-fixes identified in developer-enter...
Adrian Bachmann, Christian Bird, Foyzur Rahman, Pr...
BIBM
2007
IEEE
144views Bioinformatics» more  BIBM 2007»
15 years 4 months ago
Kinetic Modeling Using BioPAX Ontology
Thousands of biochemical interactions are available for download from curated databases such as Reactome, Pathway Interaction Database and other sources in the Biological Pathways...
Oliver Ruebenacker, Ion I. Moraru, James C. Schaff...
SIGMOD
2011
ACM
282views Database» more  SIGMOD 2011»
14 years 15 days ago
SkylineSearch: semantic ranking and result visualization for pubmed
Life sciences researchers perform scientific literature search as part of their daily activities. Many such searches are executed against PubMed, a central repository of life sci...
Julia Stoyanovich, Mayur Lodha, William Mee, Kenne...
91
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KDD
2006
ACM
222views Data Mining» more  KDD 2006»
15 years 10 months ago
A component-based framework for knowledge discovery in bioinformatics
Motivation: In the field of bioinformatics there is an emerging need to integrate all knowledge discovery steps into a standardized modular framework. Indeed, component-based deve...
Julien Etienne, Bernd Wachmann, Lei Zhang
BMCBI
2004
169views more  BMCBI 2004»
14 years 9 months ago
A power law global error model for the identification of differentially expressed genes in microarray data
Background: High-density oligonucleotide microarray technology enables the discovery of genes that are transcriptionally modulated in different biological samples due to physiolog...
Norman Pavelka, Mattia Pelizzola, Caterina Vizzard...