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BMCBI
2008
95views more  BMCBI 2008»
14 years 9 months ago
Gene set analyses for interpreting microarray experiments on prokaryotic organisms
Background: Despite the widespread usage of DNA microarrays, questions remain about how best to interpret the wealth of gene-by-gene transcriptional levels that they measure. Rece...
Nathan L. Tintle, Aaron A. Best, Matthew DeJongh, ...
BMCBI
2008
98views more  BMCBI 2008»
14 years 9 months ago
Assessing probe-specific dye and slide biases in two-color microarray data
Background: A primary reason for using two-color microarrays is that the use of two samples labeled with different dyes on the same slide, that bind to probes on the same spot, is...
Ruixiao Lu, Geun-Cheol Lee, Michael Shultz, Chris ...
BMCBI
2008
158views more  BMCBI 2008»
14 years 9 months ago
Metrics for GO based protein semantic similarity: a systematic evaluation
Background: Several semantic similarity measures have been applied to gene products annotated with Gene Ontology terms, providing a basis for their functional comparison. However,...
Catia Pesquita, Daniel Faria, Hugo P. Bastos, Ant&...
CCE
2008
14 years 9 months ago
Dynamic scheduling of multiproduct pipelines with multiple delivery due dates
Scheduling product batches in pipelines is a very complex task with many constraints to be considered. Several papers have been published on the subject during the last decade. Mo...
Diego C. Cafaro, Jaime Cerdá
BMCBI
2006
141views more  BMCBI 2006»
14 years 9 months ago
The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case
Background: Incorporation of ontologies into annotations has enabled 'semantic integration' of complex data, making explicit the knowledge within a certain field. One of...
Alexander García Castro, Philippe Rocca-Ser...