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119
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BMCBI
2010
137views more  BMCBI 2010»
15 years 5 months ago
BS Seeker: precise mapping for bisulfite sequencing
Background: Bisulfite sequencing using next generation sequencers yields genome-wide measurements of DNA methylation at single nucleotide resolution. Traditional aligners are not ...
Pao-Yang Chen, Shawn Cokus, Matteo Pellegrini
114
Voted
BMCBI
2007
99views more  BMCBI 2007»
15 years 5 months ago
Flexible mapping of homology onto structure with Homolmapper
Background: Over the past decade, a number of tools have emerged for the examination of homology relationships among protein sequences in a structural context. Most recent softwar...
Nathan C. Rockwell, J. Clark Lagarias
135
Voted
BMCBI
2008
130views more  BMCBI 2008»
15 years 5 months ago
FAF-Drugs2: Free ADME/tox filtering tool to assist drug discovery and chemical biology projects
Background: Drug discovery and chemical biology are exceedingly complex and demanding enterprises. In recent years there are been increasing awareness about the importance of pred...
David Lagorce, Olivier Sperandio, Hervé Gal...
173
Voted
TCBB
2010
144views more  TCBB 2010»
14 years 11 months ago
Querying Graphs in Protein-Protein Interactions Networks Using Feedback Vertex Set
Recent techniques increase rapidly the amount of our knowledge on interactions between proteins. The interpretation of these new information depends on our ability to retrieve kno...
Guillaume Blin, Florian Sikora, Stéphane Vi...
FLOPS
2010
Springer
15 years 12 months ago
Beluga: Programming with Dependent Types, Contextual Data, and Contexts
The logical framework LF provides an elegant foundation for specifying formal systems and proofs and it is used successfully in a wide range of applications such as certifying code...
Brigitte Pientka