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BIOCOMP
2007
13 years 6 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ...
Xuehui Li, Tamer Kahveci
SIGMOD
2004
ACM
109views Database» more  SIGMOD 2004»
14 years 5 months ago
Piers: An Efficient Model for Similarity Search in DNA Sequence Databases
Growing interest in genomic research has resulted in the creation of huge biological sequence databases. In this paper, we present a hash-based pier model for efficient homology s...
Xia Cao, Shuai Cheng Li, Beng Chin Ooi, Anthony K....
VISUALIZATION
1995
IEEE
13 years 9 months ago
Visualization of Biological Sequence Similarity Search Results
Biological sequence similarity analysis presents visualization challenges, primarily because of the massive amounts of discrete, multi-dimensional data. Genomic data generated by ...
Ed Huai-hsin Chi, Phillip Barry, Elizabeth Shoop, ...
VISUALIZATION
1996
IEEE
13 years 9 months ago
Flexible Information Visualization of Multivariate Data from Biological Sequence Similarity Searches
Information visualization faces challenges presented by the need to represent abstract data and the relationships within the data. Previously, we presented a system for visualizin...
Ed Huai-hsin Chi, John Riedl, Elizabeth Shoop, Joh...
NAR
2011
236views Computer Vision» more  NAR 2011»
12 years 8 months ago
The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfish
The catfish genome database, cBARBEL (abbreviated from catfish Breeder And Researcher Bioinformatics Entry Location) is an online open-access database for genome biology of ictalu...
Jianguo Lu, Eric Peatman, Qing Yang, Shaolin Wang,...