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» Quantifying Homology Classes
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BMCBI
2010
98views more  BMCBI 2010»
15 years 1 months ago
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure
Background: Prediction of protein structural classes (a, b, a + b and a/b) from amino acid sequences is of great importance, as it is beneficial to study protein function, regulat...
Jian-Yi Yang, Zhen-Ling Peng, Xin Chen
EC
2006
163views ECommerce» more  EC 2006»
15 years 1 months ago
An Extension of Geiringer's Theorem for a Wide Class of Evolutionary Search Algorithms
The frequency with which various elements of the search space of a given evolutionary algorithm are sampled is affected by the family of recombination (reproduction) operators. Th...
Boris Mitavskiy, Jonathan E. Rowe
104
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JCB
2000
91views more  JCB 2000»
15 years 1 months ago
Scaling Laws and Similarity Detection in Sequence Alignment with Gaps
We study the problem of similarity detection by sequence alignment with gaps, using a recently established theoretical framework based on the morphology of alignment paths. Alignm...
Dirk Drasdo, Terence Hwa, Michael Lässig
OOPSLA
2000
Springer
15 years 5 months ago
An efficient class and object encoding
An object encoding translates a language with object primitives to one without. Similarly, a class encoding translates classes into other primitives. Both are important theoretica...
Neal Glew
JCC
2008
117views more  JCC 2008»
15 years 1 months ago
Prediction of protein structural class using novel evolutionary collocation-based sequence representation
: Knowledge of structural classes is useful in understanding of folding patterns in proteins. Although existing structural class prediction methods applied virtually all state-of-t...
Ke Chen 0003, Lukasz A. Kurgan, Jishou Ruan