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BMCBI
2006
116views more  BMCBI 2006»
14 years 11 months ago
MICA: desktop software for comprehensive searching of DNA databases
Background: Molecular biologists work with DNA databases that often include entire genomes. A common requirement is to search a DNA database to find exact matches for a nondegener...
William A. Stokes, Benjamin S. Glick
IPPS
2000
IEEE
15 years 3 months ago
Bandwidth-Efficient Collective Communication for Clustered Wide Area Systems
Metacomputing infrastructures couple multiple clusters (or MPPs) via wide-area networks. A major problem in programming parallel applications for such platforms is their hierarchi...
Thilo Kielmann, Henri E. Bal, Sergei Gorlatch
TKDE
2002
140views more  TKDE 2002»
14 years 11 months ago
Transaction Processing in Mobile, Heterogeneous Database Systems
As technological advances are made in software and hardware, the feasibility of accessing information "any time, anywhere" is becoming a reality. Furthermore, the diversi...
James B. Lim, Ali R. Hurson
ICDE
2010
IEEE
249views Database» more  ICDE 2010»
15 years 6 months ago
PARINET: A tunable access method for in-network trajectories
— In this paper we propose PARINET, a new access method to efficiently retrieve the trajectories of objects moving in networks. The structure of PARINET is based on a combination...
Iulian Sandu Popa, Karine Zeitouni, Vincent Oria, ...
BMCBI
2011
14 years 3 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes