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SODA
2003
ACM
106views Algorithms» more  SODA 2003»
15 years 1 months ago
Maintaining all-pairs approximate shortest paths under deletion of edges
We present a hierarchical scheme for efficiently maintaining all-pairs approximate shortest-paths in undirected unweighted graphs under deletions of edges. An α-approximate short...
Surender Baswana, Ramesh Hariharan, Sandeep Sen
WSC
1997
15 years 29 days ago
Multiplexed State Saving for Bounded Rollback
Optimistic parallel discrete event simulation (PDES) uses a state history trail to support rollback. State saving strategies range from making a complete copy of a model’s state...
Fabian Gomes, Brian Unger, John G. Cleary, Steve F...
BMCBI
2010
150views more  BMCBI 2010»
14 years 11 months ago
AMS 3.0: prediction of post-translational modifications
Background: We present here the recent update of AMS algorithm for identification of post-translational modification (PTM) sites in proteins based only on sequence information, us...
Subhadip Basu, Dariusz Plewczynski
BMCBI
2010
92views more  BMCBI 2010»
14 years 11 months ago
YODA: Software to facilitate high-throughput analysis of chronological life span, growth rate, and survival in budding yeast
Background: The budding yeast Saccharomyces cerevisiae is one of the most widely studied model organisms in aging-related science. Although several genetic modifiers of yeast long...
Brady Olsen, Christopher J. Murakami, Matt Kaeberl...
BMCBI
2007
135views more  BMCBI 2007»
14 years 11 months ago
Sequence similarity is more relevant than species specificity in probabilistic backtranslation
Background: Backtranslation is the process of decoding a sequence of amino acids into the corresponding codons. All synthetic gene design systems include a backtranslation module....
Alfredo Ferro, Rosalba Giugno, Giuseppe Pigola, Al...