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NAR
2010
107views more  NAR 2010»
14 years 4 months ago
PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences
Alignment-based programs are valuable tools for finding potential homologs in genome sequences. Previously, it has been shown that partition function posterior probabilities attun...
Satish Chikkagoudar, Dennis R. Livesay, Usman Rosh...
COMPLIFE
2005
Springer
15 years 3 months ago
Protein Annotation by Secondary Structure Based Alignments (PASSTA)
Abstract. Most software tools in homology recognition on proteins answer only a few specific questions, often leaving not much room for the interpretation of the results. We devel...
Constantin Bannert, Jens Stoye
EDBTW
2010
Springer
15 years 4 months ago
SPARQL query rewriting for implementing data integration over linked data
There has been lately an increased activity of publishing structured data in RDF due to the activity of the Linked Data community1 . The presence on the Web of such a huge informa...
Gianluca Correndo, Manuel Salvadores, Ian Millard,...
CIKM
2007
Springer
15 years 3 months ago
Nugget discovery in visual exploration environments by query consolidation
Queries issued by casual users or specialists exploring a data set often point us to important subsets of the data, be it clusters, outliers or other features of particular import...
Di Yang, Elke A. Rundensteiner, Matthew O. Ward
BMCBI
2011
14 years 1 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes