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    CIBCB
    2005
    IEEE
    138views Computational Biology» more  CIBCB 2005»
    Toward Protein Structure Analysis with Self-Organizing Maps
    14 years 1 days ago
    Toward Protein Structure Analysis with Self-Organizing Maps
    Download  homepage.cs.uri.edu
    - Establishing structure-function relationships on the proteomic scale is a unique challenge faced by bioinformatics and molecular biosciences. Large protein families represent nat...
    Lutz Hamel, Gongqin Sun, Jing Zhang
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    BMCBI
    2008
    176views more  BMCBI 2008»
    H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
    13 years 6 months ago
    H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments
    Download  www.biomedcentral.com
    Background: A multiple sequence alignment (MSA) generated for a protein can be used to characterise residues by means of a statistical analysis of single columns. In addition to t...
    Rainer Merkl, Matthias Zwick
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    ICML
    2005
    IEEE
    117views Machine Learning» more  ICML 2005»
    New kernels for protein structural motif discovery and function classification
    14 years 7 months ago
    New kernels for protein structural motif discovery and function classification
    Download  www.cse.unl.edu
    We present new, general-purpose kernels for protein structure analysis, and describe how to apply them to structural motif discovery and function classification. Experiments show ...
    Chang Wang, Stephen D. Scott
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    BMCBI
    2008
    132views more  BMCBI 2008»
    SCOWLP classification: Structural comparison and analysis of protein binding regions
    13 years 6 months ago
    SCOWLP classification: Structural comparison and analysis of protein binding regions
    Download  www.biomedcentral.com
    Background: Detailed information about protein interactions is critical for our understanding of the principles governing protein recognition mechanisms. The structures of many pr...
    Joan Teyra, Maciej Paszkowski-Rogacz, Gerd Anders,...
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    BMCBI
    2010
    118views more  BMCBI 2010»
    Computing H/D-Exchange rates of single residues from data of proteolytic fragments
    13 years 6 months ago
    Computing H/D-Exchange rates of single residues from data of proteolytic fragments
    Download  www.biomedcentral.com
    Background: Protein conformation and protein/protein interaction can be elucidated by solution-phase Hydrogen/ Deuterium exchange (sHDX) coupled to high-resolution mass analysis o...
    Ernst Althaus, Stefan Canzar, Carsten Ehrler, Mark...
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