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CORR
2010
Springer
94views Education» more  CORR 2010»
14 years 4 months ago
Partitions and Coverings of Trees by Bounded-Degree Subtrees
This paper addresses the following questions for a given tree T and integer d 2: (1) What is the minimum number of degree-d subtrees that partition E(T)? (2) What is the minimum n...
David R. Wood
BMCBI
2006
107views more  BMCBI 2006»
14 years 9 months ago
Simplifying gene trees for easier comprehension
Background: In the genomic age, gene trees may contain large amounts of data making them hard to read and understand. Therefore, an automated simplification is important. Results:...
Paul-Ludwig Lott, Marvin Mundry, Christoph Sassenb...
JCB
2006
67views more  JCB 2006»
14 years 9 months ago
The Identifiability of Tree Topology for Phylogenetic Models, Including Covarion and Mixture Models
For a model of molecular evolution to be useful for phylogenetic inference, the topology of evolutionary trees must be identifiable. That is, from a joint distribution the model p...
Elizabeth S. Allman, John A. Rhodes
IJFCS
2007
80views more  IJFCS 2007»
14 years 9 months ago
Bisimulation Minimization of Tree Automata
We extend an algorithm by Paige and Tarjan that solves the coarsest stable refinement problem to the domain of trees. The algorithm is used to minimize non-deterministic tree auto...
Parosh Aziz Abdulla, Johanna Högberg, Lisa Ka...
ISAAC
2009
Springer
109views Algorithms» more  ISAAC 2009»
15 years 4 months ago
A Linear Vertex Kernel for Maximum Internal Spanning Tree
We present an algorithm that for any graph G and integer k ≥ 0 in time polynomial in the size of G either nds a spanning tree with at least k internal vertices, or outputs a ne...
Fedor V. Fomin, Serge Gaspers, Saket Saurabh, St&e...