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BMCBI
2004
177views more  BMCBI 2004»
15 years 6 months ago
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model
Background: Certain protein families are highly conserved across distantly related organisms and belong to large and functionally diverse superfamilies. The patterns of conservati...
Andrew F. Neuwald, Jun S. Liu
IPPS
2005
IEEE
15 years 12 months ago
On the Optimal Placement of Secure Data Objects over Internet
Secret sharing algorithms have been used for intrusion tolerance, which ensure the confidentiality, integrity and availability of critical information. However, dynamically changi...
Manghui Tu, Peng Li, Qingkai Ma, I-Ling Yen, Farok...
POS
1998
Springer
15 years 10 months ago
Swizzle Barrier Optimizations for Orthogonal Persistence in Java
Swizzling refers to the translation of object references from an external, persistent format to an internal, transient format used during application execution. Eager swizzling sc...
Kumar Brahnmath, Nathaniel Nystrom, Antony L. Hosk...
171
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BMCBI
2010
183views more  BMCBI 2010»
15 years 6 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
BMCBI
2008
166views more  BMCBI 2008»
15 years 6 months ago
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Background: The analysis of large-scale data sets via clustering techniques is utilized in a number of applications. Biclustering in particular has emerged as an important problem...
Peter A. DiMaggio Jr., Scott R. McAllister, Christ...