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» Randomization in Parallel Stringology
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SPAA
2004
ACM
15 years 8 months ago
Online algorithms for prefetching and caching on parallel disks
Parallel disks provide a cost effective way of speeding up I/Os in applications that work with large amounts of data. The main challenge is to achieve as much parallelism as poss...
Rahul Shah, Peter J. Varman, Jeffrey Scott Vitter
131
Voted
ICPP
2006
IEEE
15 years 8 months ago
A Formal Analysis of Space Filling Curves for Parallel Domain Decomposition
Space filling curves (SFCs) are widely used for parallel domain decomposition in scientific computing applications. The proximity preserving properties of SFCs are expected to k...
Srikanta Tirthapura, Sudip Seal, Srinivas Aluru
BMCBI
2005
246views more  BMCBI 2005»
15 years 2 months ago
ParPEST: a pipeline for EST data analysis based on parallel computing
Background: Expressed Sequence Tags (ESTs) are short and error-prone DNA sequences generated from the 5' and 3' ends of randomly selected cDNA clones. They provide an im...
Nunzio D'Agostino, Mario Aversano, Maria Luisa Chi...
IPPS
2006
IEEE
15 years 8 months ago
Algorithm-based checkpoint-free fault tolerance for parallel matrix computations on volatile resources
As the desire of scientists to perform ever larger computations drives the size of today’s high performance computers from hundreds, to thousands, and even tens of thousands of ...
Zizhong Chen, Jack Dongarra
132
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HPDC
2010
IEEE
15 years 3 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...