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    BMCBI
    2010
    227views more  BMCBI 2010»
    Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage
    14 years 9 months ago
    Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage
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    Background: HIV-1 targets human cells expressing both the CD4 receptor, which binds the viral envelope glycoprotein gp120, as well as either the CCR5 (R5) or CXCR4 (X4) co-recepto...
    Majid Masso, Iosif I. Vaisman
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    BMCBI
    2008
    153views more  BMCBI 2008»
    Estimating the size of the solution space of metabolic networks
    14 years 9 months ago
    Estimating the size of the solution space of metabolic networks
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    Background: Cellular metabolism is one of the most investigated system of biological interactions. While the topological nature of individual reactions and pathways in the network...
    Alfredo Braunstein, Roberto Mulet, Andrea Pagnani
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    BMCBI
    2008
    146views more  BMCBI 2008»
    A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data
    14 years 9 months ago
    A phase synchronization clustering algorithm for identifying interesting groups of genes from cell cycle expression data
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    Background: The previous studies of genome-wide expression patterns show that a certain percentage of genes are cell cycle regulated. The expression data has been analyzed in a nu...
    Chang Sik Kim, Cheol Soo Bae, Hong Joon Tcha
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    BMCBI
    2007
    113views more  BMCBI 2007»
    Hinge Atlas: relating protein sequence to sites of structural flexibility
    14 years 9 months ago
    Hinge Atlas: relating protein sequence to sites of structural flexibility
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    Background: Relating features of protein sequences to structural hinges is important for identifying domain boundaries, understanding structure-function relationships, and designi...
    Samuel Flores, Long J. Lu, Julie Yang, Nicholas Ca...
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    BMCBI
    2007
    134views more  BMCBI 2007»
    Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
    14 years 9 months ago
    Nearest Neighbor Networks: clustering expression data based on gene neighborhoods
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    Background: The availability of microarrays measuring thousands of genes simultaneously across hundreds of biological conditions represents an opportunity to understand both indiv...
    Curtis Huttenhower, Avi I. Flamholz, Jessica N. La...
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