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» Rank-aware clustering of structured datasets
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BMCBI
2008
116views more  BMCBI 2008»
14 years 9 months ago
A novel representation of RNA secondary structure based on element-contact graphs
Background: Depending on their specific structures, noncoding RNAs (ncRNAs) play important roles in many biological processes. Interest in developing new topological indices based...
Wenjie Shu, Xiaochen Bo, Zhiqiang Zheng, Shengqi W...
VLDB
2000
ACM
229views Database» more  VLDB 2000»
15 years 1 months ago
Local Dimensionality Reduction: A New Approach to Indexing High Dimensional Spaces
Many emerging application domains require database systems to support efficient access over highly multidimensional datasets. The current state-of-the-art technique to indexing hi...
Kaushik Chakrabarti, Sharad Mehrotra
BMCBI
2006
114views more  BMCBI 2006»
14 years 9 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
GEOINFO
2004
14 years 11 months ago
Parallel Volume Rendering for Ocean Visualization in a Cluster of PCs
Volume rendering techniques can be very useful in geographical information systems to provide meaningful and visual information about the surface and the interior of 3D datasets. ...
Alexandre Coelho, Marcio Nascimento, Cristiana Ben...
BMCBI
2006
170views more  BMCBI 2006»
14 years 9 months ago
Biclustering of gene expression data by non-smooth non-negative matrix factorization
Background: The extended use of microarray technologies has enabled the generation and accumulation of gene expression datasets that contain expression levels of thousands of gene...
Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Fra...