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BMCBI
2005
104views more  BMCBI 2005»
15 years 1 months ago
Scoring functions for transcription factor binding site prediction
Background: Transcription factor binding site (TFBS) prediction is a difficult problem, which requires a good scoring function to discriminate between real binding sites and backg...
Markus T. Friberg, Peter von Rohr, Gaston H. Gonne...
NAR
2011
225views Computer Vision» more  NAR 2011»
14 years 4 months ago
IsoBase: a database of functionally related proteins across PPI networks
We describe IsoBase, a database identifying functionally related proteins, across five major eukaryotic model organisms: Saccharomyces cerevisiae, Drosophila melanogaster, Caenorh...
Daniel Park, Rohit Singh, Michael Baym, Chung-Shou...
BMCBI
2008
135views more  BMCBI 2008»
15 years 1 months ago
Functional site prediction selects correct protein models
Background: The prediction of protein structure can be facilitated by the use of constraints based on a knowledge of functional sites. Without this information it is still possibl...
Vijayalakshmi Chelliah, William R. Taylor
BMCBI
2007
119views more  BMCBI 2007»
15 years 1 months ago
Efficacy of different protein descriptors in predicting protein functional families
Background: Sequence-derived structural and physicochemical descriptors have frequently been used in machine learning prediction of protein functional families, thus there is a ne...
Serene A. K. Ong, Hong Huang Lin, Yu Zong Chen, Ze...
WWW
2006
ACM
16 years 2 months ago
Optimizing scoring functions and indexes for proximity search in type-annotated corpora
We introduce a new, powerful class of text proximity queries: find an instance of a given "answer type" (person, place, distance) near "selector" tokens matchi...
Soumen Chakrabarti, Kriti Puniyani, Sujatha Das