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» Recognizing Balanceable Matrices
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BMCBI
2007
95views more  BMCBI 2007»
14 years 9 months ago
Phylogenetic tree information aids supervised learning for predicting protein-protein interaction based on distance matrices
Background: Protein-protein interactions are critical for cellular functions. Recently developed computational approaches for predicting protein-protein interactions utilize co-ev...
Roger A. Craig, Li Liao
BMCBI
2006
120views more  BMCBI 2006»
14 years 9 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
DATE
2008
IEEE
170views Hardware» more  DATE 2008»
15 years 4 months ago
ETBR: Extended Truncated Balanced Realization Method for On-Chip Power Grid Network Analysis
In this paper, we present a novel simulation approach for power grid network analysis. The new approach, called ETBR for extended truncated balanced realization, is based on model...
Duo Li, Sheldon X.-D. Tan, Bruce McGaughy
ICCAD
2005
IEEE
106views Hardware» more  ICCAD 2005»
15 years 3 months ago
Fast balanced stochastic truncation via a quadratic extension of the alternating direction implicit iteration
— Balanced truncation (BT) model order reduction (MOR) is known for its superior accuracy and computable error bounds. Balanced stochastic truncation (BST) is a particular BT pro...
Ngai Wong, Venkataramanan Balakrishnan
IPPS
2006
IEEE
15 years 3 months ago
An approach to locality-conscious load balancing and transparent memory hierarchy management with a global-address-space paralle
The development of efficient parallel out-of-core applications is often tedious, because of the need to explicitly manage the movement of data between files and data structures ...
Sriram Krishnamoorthy, Ümit V. Çataly&...