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RECOMB
2006
Springer
16 years 1 months ago
A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer
We introduce a Markov model for the evolution of a gene family along a phylogeny. The model includes parameters for the rates of horizontal gene transfer, gene duplication, and gen...
István Miklós, Miklós Csü...
RECOMB
2010
Springer
14 years 11 months ago
An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers
(Motivation) Tree reconciliation is an approach that explains the discrepancies between two evolutionary trees by a number of events such as speciations, duplications, transfers an...
Jean-Philippe Doyon, Celine Scornavacca, K. Yu. Go...
124
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BMCBI
2010
108views more  BMCBI 2010»
15 years 19 days ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...
RECOMB
2009
Springer
16 years 1 months ago
New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees
Reconciliation between a set of gene trees and a species tree is the most commonly used approach to infer the duplication and loss events in the evolution of gene families, given a...
Cedric Chauve, Nadia El-Mabrouk