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ICS
2009
Tsinghua U.
15 years 4 months ago
MPI-aware compiler optimizations for improving communication-computation overlap
Several existing compiler transformations can help improve communication-computation overlap in MPI applications. However, traditional compilers treat calls to the MPI library as ...
Anthony Danalis, Lori L. Pollock, D. Martin Swany,...
ICSM
2007
IEEE
15 years 4 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
SEMWEB
2007
Springer
15 years 4 months ago
Change Paths in Reasoning!
Millions of research funding has been put down to develop - what I call - old forms - of reasoning that are characterized by strong focus on theoretical properties and strict adher...
Raphael Volz
ACMSE
2006
ACM
15 years 3 months ago
Middleware specialization using aspect oriented programming
Standardized middleware is used to build large distributed real-time and enterprise (DRE) systems. These middleware are highly flexible and support a large number of features sin...
Dimple Kaul, Aniruddha S. Gokhale
BMCBI
2011
14 years 1 months ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...
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