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172
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ICS
2009
Tsinghua U.
16 years 1 months ago
MPI-aware compiler optimizations for improving communication-computation overlap
Several existing compiler transformations can help improve communication-computation overlap in MPI applications. However, traditional compilers treat calls to the MPI library as ...
Anthony Danalis, Lori L. Pollock, D. Martin Swany,...
188
Voted
ICSM
2007
IEEE
16 years 1 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
SEMWEB
2007
Springer
16 years 25 days ago
Change Paths in Reasoning!
Millions of research funding has been put down to develop - what I call - old forms - of reasoning that are characterized by strong focus on theoretical properties and strict adher...
Raphael Volz
ACMSE
2006
ACM
16 years 21 days ago
Middleware specialization using aspect oriented programming
Standardized middleware is used to build large distributed real-time and enterprise (DRE) systems. These middleware are highly flexible and support a large number of features sin...
Dimple Kaul, Aniruddha S. Gokhale
187
Voted
BMCBI
2011
14 years 10 months ago
A Novel And Well-Defined Benchmarking Method For Second Generation Read Mapping
Background: Second generation sequencing technologies yield DNA sequence data at ultra high-throughput. Common to most biological applications is a mapping of the reads to an almo...
Manuel Holtgrewe, Anne-Katrin Emde, David Weese, K...
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