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» Reconstructing Numbers from Pairwise Function Values
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WOB
2008
128views Bioinformatics» more  WOB 2008»
15 years 1 months ago
Tests for Gene Clusters Satisfying the Generalized Adjacency Criterion
Abstract. We study a parametrized definition of gene clusters that permits control over the trade-off between increasing gene content versus conserving gene order within a cluster....
Ximing Xu, David Sankoff
CSDA
2011
14 years 6 months ago
Approximate forward-backward algorithm for a switching linear Gaussian model
Motivated by the application of seismic inversion in the petroleum industry we consider a hidden Markov model with two hidden layers. The bottom layer is a Markov chain and given ...
Hugo Hammer, Håkon Tjelmeland
BMCBI
2006
127views more  BMCBI 2006»
14 years 12 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
GECCO
2003
Springer
15 years 5 months ago
Mining Comprehensible Clustering Rules with an Evolutionary Algorithm
In this paper, we present a novel evolutionary algorithm, called NOCEA, which is suitable for Data Mining (DM) clustering applications. NOCEA evolves individuals that consist of a ...
Ioannis A. Sarafis, Philip W. Trinder, Ali M. S. Z...
BIOINFORMATICS
2012
13 years 2 months ago
MolClass: a web portal to interrogate diverse small molecule screen datasets with different computational models
Summary: The MolClass toolkit and data portal generates computational models from user-defined small molecule datasets based on structural features identified in hit and non-hit m...
Jan Wildenhain, Nicholas FitzGerald, Mike Tyers