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» Reflections on a Geometry of Processes
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BMCBI
2008
132views more  BMCBI 2008»
14 years 12 months ago
The Average Mutual Information Profile as a Genomic Signature
Background: Occult organizational structures in DNA sequences may hold the key to understanding functional and evolutionary aspects of the DNA molecule. Such structures can also p...
Mark Bauer, Sheldon M. Schuster, Khalid Sayood
CN
2008
110views more  CN 2008»
14 years 12 months ago
The eternal sunshine of the sketch data structure
In the past years there has been significant research on developing compact data structures for summarizing large data streams. A family of such data structures is the so-called s...
Xenofontas A. Dimitropoulos, Marc Ph. Stoecklin, P...
BMCBI
2006
84views more  BMCBI 2006»
14 years 12 months ago
Inferring topology from clustering coefficients in protein-protein interaction networks
Background: Although protein-protein interaction networks determined with high-throughput methods are incomplete, they are commonly used to infer the topology of the complete inte...
Caroline C. Friedel, Ralf Zimmer
BMCBI
2007
126views more  BMCBI 2007»
14 years 11 months ago
Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation
Background: Biochemical investigations over the last decades have elucidated an increasingly complete image of the cellular metabolism. To derive a systems view for the regulation...
Gunnar Schramm, Marc Zapatka, Roland Eils, Rainer ...
MAGS
2006
150views more  MAGS 2006»
14 years 11 months ago
The Agent-Rule-Class framework for Multi-Agent Systems
Multi-Agent Systems (MAS) have become increasingly mature, but this maturity does not make the traditional Object Oriented (OO) approaches obsolete. On the contrary, building MAS i...
Liang Xiao 0002, Des Greer