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BMCBI
2006
122views more  BMCBI 2006»
15 years 2 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...
BMCBI
2006
131views more  BMCBI 2006»
15 years 2 months ago
The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison
Background: Analysis of DNA microarray data takes as input spot intensity measurements from scanner software and returns differential expression of genes between two conditions, t...
Allan A. Sioson, Shrinivasrao P. Mane, Pinghua Li,...
WWW
2003
ACM
16 years 2 months ago
SHOCK: communicating with computational messages and automatic private profiles
A computationally enhanced message contains some embedded programmatic components that are interpreted and executed automatically upon receipt. Unlike ordinary text email or insta...
Rajan M. Lukose, Eytan Adar, Joshua R. Tyler, Caes...
KDD
2006
ACM
222views Data Mining» more  KDD 2006»
16 years 2 months ago
A component-based framework for knowledge discovery in bioinformatics
Motivation: In the field of bioinformatics there is an emerging need to integrate all knowledge discovery steps into a standardized modular framework. Indeed, component-based deve...
Julien Etienne, Bernd Wachmann, Lei Zhang
ICDE
2010
IEEE
248views Database» more  ICDE 2010»
16 years 1 months ago
FPGA Acceleration for the Frequent Item Problem
Abstract-- Field-programmable gate arrays (FPGAs) can provide performance advantages with a lower resource consumption (e.g., energy) than conventional CPUs. In this paper, we show...
Gustavo Alonso, Jens Teubner, René Mül...