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BMCBI
2004
228views more  BMCBI 2004»
15 years 6 months ago
An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results
Background: Many proteomics initiatives require a seamless bioinformatics integration of a range of analytical steps between sample collection and systems modeling immediately ass...
Romesh Stanislaus, Liu Hong Jiang, Martha Swartz, ...
PPDP
2010
Springer
15 years 4 months ago
Rewrite-based verification of XML updates
We propose a model for XML update primitives of the W3C XQuery Update Facility as parameterized rewriting rules of the form: "insert an unranked tree from a regular tree lang...
Florent Jacquemard, Michaël Rusinowitch
KDD
2012
ACM
205views Data Mining» more  KDD 2012»
13 years 9 months ago
Rank-loss support instance machines for MIML instance annotation
Multi-instance multi-label learning (MIML) is a framework for supervised classification where the objects to be classified are bags of instances associated with multiple labels....
Forrest Briggs, Xiaoli Z. Fern, Raviv Raich
BMCBI
2004
161views more  BMCBI 2004»
15 years 6 months ago
Three-parameter lognormal distribution ubiquitously found in cDNA microarray data and its application to parametric data treatme
Background: To cancel experimental variations, microarray data must be normalized prior to analysis. Where an appropriate model for statistical data distribution is available, a p...
Tomokazu Konishi
JCB
2006
215views more  JCB 2006»
15 years 6 months ago
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e., segmentation con...
Yan Liu 0002, Jaime G. Carbonell, Peter Weigele, V...