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ICTAC
2005
Springer
15 years 3 months ago
Stochastic Analysis of Graph Transformation Systems: A Case Study in P2P Networks
In distributed and mobile systems with volatile bandwidth and fragile connectivity, non-functional aspects like performance and reliability become more and more important. To forma...
Reiko Heckel
ICASSP
2011
IEEE
14 years 1 months ago
Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor mo
—Transcriptional regulation by transcription factors (TFs) and microRNAs controls when and how much RNA is created. Due to technical limitations, the protein level expressions of...
Jia Meng, Hung-I Harry Chen, Jianqiu Zhang, Yidong...
NC
2008
122views Neural Networks» more  NC 2008»
14 years 9 months ago
Computation with finite stochastic chemical reaction networks
A highly desired part of the synthetic biology toolbox is an embedded chemical microcontroller, capable of autonomously following a logic program specified by a set of instructions...
David Soloveichik, Matthew Cook, Erik Winfree, Jeh...
GECCO
2006
Springer
202views Optimization» more  GECCO 2006»
15 years 1 months ago
Inference of genetic networks using S-system: information criteria for model selection
In this paper we present an evolutionary approach for inferring the structure and dynamics in gene circuits from observed expression kinetics. For representing the regulatory inte...
Nasimul Noman, Hitoshi Iba
CMSB
2007
Springer
15 years 3 months ago
Context Sensitivity in Logical Modeling with Time Delays
For modeling and analyzing regulatory networks based on qualitative information and possibly additional temporal constraints, approaches using hybrid automata can be very helpful. ...
Heike Siebert, Alexander Bockmayr