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153
Voted
BMCBI
2007
112views more  BMCBI 2007»
15 years 6 months ago
PFAAT version 2.0: A tool for editing, annotating, and analyzing multiple sequence alignments
Background: By virtue of their shared ancestry, homologous sequences are similar in their structure and function. Consequently, multiple sequence alignments are routinely used to ...
Daniel R. Caffrey, Paul H. Dana, Vidhya Mathur, Ma...
170
Voted
JIIS
2006
113views more  JIIS 2006»
15 years 6 months ago
Spatial ordering and encoding for geographic data mining and visualization
: Geographic information (e.g., locations, networks, and nearest neighbors) are unique and different from other aspatial attributes (e.g., population, sales, or income). It is a ch...
Diansheng Guo, Mark Gahegan
BMCBI
2005
97views more  BMCBI 2005»
15 years 6 months ago
Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
Background: As genomes evolve after speciation, gene content, coding sequence, gene expression, and splicing all diverge with time from ancestors with close relatives. A minimum e...
Roald Rossnes, Ingvar Eidhammer, David A. Liberles
229
Voted
BMCBI
2011
15 years 1 months ago
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
Background: In the last decades, microarray technology has spread, leading to a dramatic increase of publicly available datasets. The first statistical tools developed were focuse...
Paolo G. V. Martini, Davide Risso, Gabriele Sales,...
ESWS
2011
Springer
14 years 9 months ago
DataFinland - A Semantic Portal for Open and Linked Datasets
The number of open datasets available on the web is increasing rapidly with the rise of the Linked Open Data (LOD) cloud and various governmental efforts for releasing public data ...
Matias Frosterus, Eero Hyvönen, Joonas Laitio