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» Removing the Genetics from the Standard Genetic Algorithm
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BMCBI
2011
14 years 1 months ago
Genotype calling in tetraploid species from bi-allelic marker data using mixture models
Background: Automated genotype calling in tetraploid species was until recently not possible, which hampered genetic analysis. Modern genotyping assays often produce two signals, ...
Roeland E. Voorrips, Gerrit Gort, Ben Vosman
SP
2008
IEEE
134views Security Privacy» more  SP 2008»
14 years 9 months ago
Discover gene specific local co-regulations from time-course gene expression data
Discovering gene co-regulatory relationships is one of most important research in DNA microarray data analysis. The problem of gene specific co-regulation discovery is to, for a p...
Ji Zhang, Qigang Gao, Hai H. Wang
JCC
2008
88views more  JCC 2008»
14 years 9 months ago
A self-organizing algorithm for molecular alignment and pharmacophore development
Abstract: We present a method for simultaneous three-dimensional (3D) structure generation and pharmacophorebased alignment using a self-organizing algorithm called Stochastic Prox...
Deepak Bandyopadhyay, Dimitris K. Agrafiotis
BMCBI
2011
14 years 1 months ago
Proportion statistics to detect differentially expressed genes: a comparison with log-ratio statistics
Background: In genetic transcription research, gene expression is typically reported in a test sample relative to a reference sample. Laboratory assays that measure gene expressio...
Tracy L. Bergemann, Jason Wilson
STACS
2007
Springer
15 years 4 months ago
Testing Convexity Properties of Tree Colorings
A coloring of a graph is convex if it induces a partition of the vertices into connected subgraphs. Besides being an interesting property from a theoretical point of view, tests f...
Eldar Fischer, Orly Yahalom