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» Removing the Genetics from the Standard Genetic Algorithm
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DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
15 years 3 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
CP
2003
Springer
15 years 2 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
DIALM
2005
ACM
130views Algorithms» more  DIALM 2005»
14 years 11 months ago
On lower bounds for MAC layer contention in CSMA/CA-based wireless networks
Wireless LANs operating within unlicensed frequency bands require random access schemes such as CSMA/CA, so that wireless networks from different administrative domains (for exam...
Frank A. Zdarsky, Ivan Martinovic, Jens B. Schmitt
BMCBI
2008
160views more  BMCBI 2008»
14 years 9 months ago
Feature selection environment for genomic applications
Background: Feature selection is a pattern recognition approach to choose important variables according to some criteria in order to distinguish or explain certain phenomena (i.e....
Fabrício Martins Lopes, David Correa Martin...
ICCAD
2009
IEEE
147views Hardware» more  ICCAD 2009»
14 years 7 months ago
SAT-based protein design
Computational protein design can be formulated as an optimization problem, where the objective is to identify the sequence of amino acids that minimizes the energy of a given prot...
Noah Ollikainen, Ellen Sentovich, Carlos Coelho, A...