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142
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CPM
2005
Springer
125views Combinatorics» more  CPM 2005»
15 years 7 months ago
Parametric Analysis for Ungapped Markov Models of Evolution
We present efficient sensitivity-analysis algorithms for two problems involving Markov models of sequence evolution: ancestral reconstruction in evolutionary trees and local ungap...
David Fernández-Baca, Balaji Venkatachalam
EOR
2006
110views more  EOR 2006»
15 years 5 months ago
Scatter search with path relinking for phylogenetic inference
We propose the use of scatter search with path relinking for the inference of phylogenetic trees. Solutions are here represented as trees whose leaves span the set of species unde...
Carlos Cotta
JCB
2007
99views more  JCB 2007»
15 years 5 months ago
Duplication and Inversion History of a Tandemly Repeated Genes Family
Given a phylogenetic tree for a family of tandemly repeated genes and their signed order on the chromosome, we aim to find the minimum number of inversions compatible with an evo...
Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, ...
JUCS
2010
148views more  JUCS 2010»
15 years 3 months ago
Applying RFD to Construct Optimal Quality-Investment Trees
: River Formation Dynamics (RFD) is an evolutionary computation method based on copying how drops form rivers by eroding the ground and depositing sediments. Given a cost-evaluated...
Pablo Rabanal, Ismael Rodríguez, Fernando R...
139
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TSMC
2011
250views more  TSMC 2011»
14 years 12 months ago
Markov Models for Biogeography-Based Optimization
—Biogeography-based optimization (BBO) is a4 population-based evolutionary algorithm that is based on the5 mathematics of biogeography. Biogeography is the science and6 study of ...
Dan Simon, Mehmet Ergezer, Dawei Du, Richard Allen...