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BMCBI
2010
135views more  BMCBI 2010»
14 years 10 months ago
Simple and flexible classification of gene expression microarrays via Swirls and Ripples
Background: A simple classification rule with few genes and parameters is desirable when applying a classification rule to new data. One popular simple classification rule, diagon...
Stuart G. Baker
BMCBI
2008
211views more  BMCBI 2008»
14 years 10 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
BMCBI
2008
110views more  BMCBI 2008»
14 years 10 months ago
Testing for treatment effects on gene ontology
In studies that use DNA arrays to assess changes in gene expression, it is preferable to measure the significance of treatment effects on a group of genes from a pathway or functi...
Taewon Lee, Varsha G. Desai, Cruz Velasco, Robert ...
JMLR
2006
108views more  JMLR 2006»
14 years 10 months ago
The Interplay of Optimization and Machine Learning Research
The fields of machine learning and mathematical programming are increasingly intertwined. Optimization problems lie at the heart of most machine learning approaches. The Special T...
Kristin P. Bennett, Emilio Parrado-Hernánde...
RE
2006
Springer
14 years 10 months ago
Interaction Analysis in Aspect-Oriented Models
Aspect-oriented concepts are currently introduced in all phases of the software development life cycle. However, the complexity of interactions among different aspects and between...
Katharina Mehner, Mattia Monga, Gabriele Taentzer